In collaboration with the AIRR Community<\/a> and in response to the AIRR Community’s call for sharing COVID-19 related AIRR-seq data<\/a> the iReceptor Project has deployed a set of iReceptor Turnkey Repositories and the project team is curating public COVID-19 data on behalf of the Community. These repositories are queryable using the AIRR Data Commons Web API<\/a> and are searchable using the iReceptor Gateway.<\/a><\/p>\n\n\n\n If you have or know of any public COVID-19 AIRR-seq data please contact us at support@ireceptor.org<\/a>. If you are interested tracking the research on COVID-19, and in particularl those studies that are producing AIRR-seq data, please follow along on the b-t.cr Wiki on COVID-19 public data<\/a>. This area is evolving fast, so please let us know if there are any papers or data sets available.<\/p>\n\n\n\n For more information on the iReceptor COVID-19 repositories, please visit the COVID-19 page<\/a>. Details on the provenance of the data stored in the AIRR COVID-19 repositories can be found in the Repository Provenance page<\/a>.<\/p>\n\n\n\n The iReceptor project runs a set of repositories that store AIRR-seq data that are nodes in the AIRR Data Commons network of repositories. These repositories are federated, at the level of the iReceptor Scientific Gateway, so that they appear as a single repository, but in reality, behind the scenes, they exist as a cluster of repositories. This is one of the key features of the iReceptor Architecture and is what allows us to scale repositories to store a very large number of AIRR-seq data sets. Collectively, we call these repositories the iReceptor Public Archive or IPA. To access the repositories, please visit the iReceptor Scientific Gateway<\/a>.<\/p>\n\n\n\n As of June 4, 2020, the iReceptor Platform transitioned to iReceptor v3.0. This release transitions to using v1.3 of the AIRR Standards and v1.0 of the AIRR Data Commons API (ADC API). For more details on this transition, in particular around the impact on data provenance, please see the iReceptor v3.0 Provenance page<\/a>.<\/p>\n\n\n\n Details on the provenance of the data stored in the iReceptor Public Archive repositories can be found in the Repository Provenance page<\/a>.<\/p>\n\n\n\n The first integration of remote AIRR-seq repositories through the iReceptor Gateway was between the VDJServer Community Data Portal<\/a> and the iReceptor Public Archive. This reflected a strong collaboration nurtured through AIRR Community Meetings<\/a> and the AIRR Community Common Repository Working Group<\/a>. VDJServer was established with funding from the National Institute of Allergy and Infectious Diseases (#1R01A1097403). VDJServer is a partner in the iReceptor+ Consortium (https:\/\/www.ireceptor-plus.com<\/a>) with current support from the European Union\u2019s Horizon 2020 Research and Innovation Program (#825821). High-Performance compute and data resources are provided by The Texas Advanced Computing Center (TACC) at The University of Texas at Austin.<\/p>\n\n\n\n Details on the provenance of the data stored in the VDJServer ADC Repository, as searchable from the iReceptor Gateway, can be found in the Repository Provenance page<\/a>.<\/p>\n\n\n\n In February of 2021 the fourth AIRR Data Commons repository was added. A collaboration through the iReceptor Plus Project<\/a>, a community portal hosted by the Yaari Lab<\/a> and iReceptor teams was created to host AIRR-seq data as part of the AIRR Data Commons. <\/p>\n\n\n\n Details on the provenance of the data stored in the VDJBase ADC Repository, as searchable from the iReceptor Gateway, can be found in the Repository Provenance page<\/a>.<\/p>\n\n\n\n In September of 2021 the fifth AIRR Data Commons repository was added. A collaboration through the iReceptor Plus Project<\/a> and DKFZ in Germany led to the installation of an iReceptor Turnkey repository at DKFZ as part of the AIRR Data Commons. <\/p>\n\n\n\n Details on the provenance of the data stored in the sciReptor\u00a0ADC Repository, as searchable from the iReceptor Gateway, can be found in the\u00a0Repository Provenance page<\/a>.<\/p>\n\n\n\n In March of 2022 the seventh AIRR Data Commons repository was added. A collaboration with the Schwab group at the University of Meunster, Germany and the iReceptor team led to the installation of an iReceptor Turnkey repository at the University of Muenster as part of the AIRR Data Commons. <\/p>\n\n\n\n Details on the provenance of the data stored in the Schwab Lab ADC Repository, as searchable from the iReceptor Gateway, can be found in the Repository Provenance page<\/a>.<\/p>\n\n\n\n In June of 2022 the eighth AIRR Data Commons repository was added. A collaboration with Roche, Kings College London, and the iReceptor team led to the installation of an iReceptor Turnkey hosted by iReceptor as part of the AIRR Data Commons. <\/p>\n\n\n\n Details on the provenance of the data stored in the Roche ADC Repository, as searchable from the iReceptor Gateway, can be found in the Repository Provenance page<\/a>.<\/p>\n\n\n\n In January of 2023 the ninth AIRR Data Commons repository was added. A collaboration with University of Colorado, University of Florida, the Sugar Science group, and the iReceptor team led to the installation of an iReceptor Turnkey hosted by IReceptor as part of the AIRR Data Commons. <\/p>\n\n\n\nThe iReceptor Public Archive<\/h2>\n\n\n\n
VDJServer Community Data Portal<\/h2>\n\n\n\n
VDJBase AIRR-Seq repository (iReceptor Turnkey)<\/h2>\n\n\n\n
sciReptor AIRR-Seq repository (iReceptor Turnkey)<\/h2>\n\n\n\n
University of Meunster AIRR-Seq repository (iReceptor Turnkey)<\/h2>\n\n\n\n
Roche\/Kings College London repository (iReceptor Turnkey)<\/h2>\n\n\n\n
Type 1 Diabetes (T1D) repository (iReceptor Turnkey)<\/h2>\n\n\n\n